SNP Profiles of NA 387(FP745) View Data

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_Input profile	TT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
1._RUQ_1057	_	_	CG	_	_	_	TT	_	CC	_	GG	_	GG	_
2._RUQ_1057	_	GG	CG	_	_	_	TT	_	_	_	_	CC	GG	_
3._NA_387	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
4._NA_387	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
5._NA_387	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
6._NA_387	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
7._GC-05-048-1-48	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
8._GC-05-048-1-48	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
9._GC-05-048-1-48	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
10._GC-05-048-1-48	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
11._RUQ_1057	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
12._NA_387	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
13._GC-05-048-1-48	CT	GG	CG	TT	CC	TT	TT	CC	CC	AA	GG	CC	GG	TT
14._RUQ_1057	AG	GG	CG	AA	CC	AA	AA	_	_	AA	GG	GG	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	GG
1._RUQ_1057	_	_	_	_	GG	GG	AA	_	AC	GG	_	_	AC	_
2._RUQ_1057	_	_	_	CC	GG	GG	_	CC	AC	GG	TT	TT	AC	AG
3._NA_387	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
4._NA_387	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
5._NA_387	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
6._NA_387	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
7._GC-05-048-1-48	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
8._GC-05-048-1-48	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
9._GC-05-048-1-48	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
10._GC-05-048-1-48	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
11._RUQ_1057	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	CT	AC	AG
12._NA_387	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
13._GC-05-048-1-48	AA	CC	CC	CC	GG	GG	AA	CC	AC	GG	TT	TT	AC	AG
14._RUQ_1057	AA	CC	GG	GG	CC	CC	_	GG	AC	GG	AA	_	AC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CC	AG	CC	AC	CC	GG	AA	AT	GG	X_X	X_X	X_X
1._RUQ_1057	_	_	_	AG	_	_	_	_	AA	_	_	X_X	X_X	X_X
2._RUQ_1057	_	AA	CC	AG	CC	AC	CC	GG	AA	_	_	X_X	X_X	X_X
3._NA_387	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
4._NA_387	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
5._NA_387	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
6._NA_387	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
7._GC-05-048-1-48	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
8._GC-05-048-1-48	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
9._GC-05-048-1-48	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
10._GC-05-048-1-48	GG	AA	CC	AG	CC	AA	CC	GG	AA	AT	GG	X_X	X_X	X_X
11._RUQ_1057	GG	AA	CC	AG	CC	AC	CC	GG	AA	AT	GG	X_X	X_X	X_X
12._NA_387	GG	AA	CC	AG	CC	AA	_	GG	AA	AT	GG	X_X	X_X	X_X
13._GC-05-048-1-48	GG	AA	CC	AG	CC	AA	_	GG	AA	AT	GG	X_X	X_X	X_X
14._RUQ_1057	GG	AA	GG	AG	GG	AC	GG	CC	AA	AT	GG	X_X	X_X	X_X

Input profile: NA_387

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Dapeng Zhang, 2016

1._NA_387 RUQ_1057

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._NA_387 RUQ_1057

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._NA_387

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 3 > FP

Dapeng Zhang, 2016

4._NA_387

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 2 > FP

Dapeng Zhang, 2016

5._NA_387

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 1 > FP

Dapeng Zhang, 2016

6._NA_387

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._NA_387 GC-05-048-1-48

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._NA_387 GC-05-048-1-48

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._NA_387 GC-05-048-1-48

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

10._NA_387 GC-05-048-1-48

96.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._NA_387 RUQ_1057

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._NA_387

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5148 5 > FP

Dapeng Zhang, 2016

13._NA_387 GC-05-048-1-48

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

14._NA_387 RUQ_1057

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1414	5	TcSNP1350
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25